Protein Class Reference

#include <PRO.h>

Collaboration diagram for Protein:

[legend]List of all members.

Public Member Functions
	Protein ()
void	clear ()
void	readPDB (char *file)
void	writePDB (char *file)
void	writePDB (char *file, char *chainName, int order=0)
void	setActive (char *str)
void	bondGeneration (int bFlag=0)
void	writeFasta (const char *fastaFile)
void	writeHydrophobicity (char *file)
void	readDSSP (char *dsspFile)
void	readHSSP (char *hsspFile)
void	setParm_mapChain (char *str, Chain *c)
void	setParm_homologyNo (int i)
void	addChain (Chain ch)
Public Attributes
char	name [80]
vector< Chain >	chain
Cofactor	cofactor
vector< Residue * >	residue_p
vector< Atom * >	atom_p
map< string, Chain * >	mapChain
bool	bondAvailable
int	homologyNo

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Constructor & Destructor Documentation

Protein::Protein (   )

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Member Function Documentation

void Protein::addChain (  Chain  ch  )  [inline]

void Protein::bondGeneration (  int  bFlag = 0  )

void Protein::clear (   )

void Protein::readDSSP (  char *  dsspFile  )

void Protein::readHSSP (  char *  hsspFile  )

void Protein::readPDB (  char *  file  )

void Protein::setActive (  char *  str  )

void Protein::setParm_homologyNo (  int  i  )  [inline]

void Protein::setParm_mapChain (  char *  str, Chain *  c )  [inline]

void Protein::writeFasta (  const char *  fastaFile  )

void Protein::writeHydrophobicity (  char *  file  )

void Protein::writePDB (  char *  file, char *  chainName, int  order = 0 )

void Protein::writePDB (  char *  file  )

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Member Data Documentation

vector<Atom *> Protein::atom_p

bool Protein::bondAvailable

vector<Chain> Protein::chain

Cofactor Protein::cofactor

int Protein::homologyNo

map<string, Chain *> Protein::mapChain

char Protein::name[80]

vector<Residue *> Protein::residue_p

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The documentation for this class was generated from the following file:

• lib/PRO.h

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